Welcome to the ECCB18 Metagenomics Tutorial!

Welcome to the ECCB18 Metagenomics Tutorial. This tutorial will guide you through the typical steps of metagenome assembly and binning.

You will run the workflow using the Common Workflow Language and all tools will be executed inside Docker containers with the aim to keep the workflow reproducible, portable and its components reusable.

• Setting up your de.NBI Cloud instance
• The Common Workflow Language
• The Docker Container Engine
• Download the Tutorial Data Set
• FastQC Quality Control
• Assembly
  • Velvet Assembly
  • MEGAHIT Assembly
  • IDBA-UD Assembly
  • Ray Assembly
• Gene Prediction
• Assembly Evaluation
  • Read Mapping
  • MetaQUAST
• Binning
  • MaxBin Binning